Genomes

News Genomes

• A new future for an old crop: barley enters the genomics age

  The barley genome is almost twice the size of that of humans and determining the sequence of its DNA has proved to be a major challenge. This paper published in Nature is a detailed overview of the functional portions of the barley genome, revealing the order and structure of its 26,000 genes. First more

• Learning the alphabet of gene control

  Scientists at Karolinska Institutet in Sweden have made a large step towards the understanding of how human genes are regulated. In a new study they identified the DNA sequences that bind to over four hundred proteins that control expression of genes. This knowledge is required to understand how dif more

• GATC Biotech is a partner in decoding the genome of the pathogen Colletotrichum

  In collaboration with the Max Planck Institute (MPI) for Plant Breeding Research in Cologne GATC Biotech AG has decoded the genome of the fungal pathogen Colletotrichum graminicola. The recently published results show that gene expression plays a decisive role in plant disease. With this knowledge t more

White papers Genomes

• Real-Time PCR Quantification of Plant miRNAs Using Universal ProbeLibrary Technology
  

  MicroRNAs (miRNAs) are naturally occurring, highly conserved families of transcripts (18-25 nt in length) that are processed from larger hairpin precursors. Both plant and animal genomes encode miRNAs, and to date, there are over 4000 mature miRNA transcripts annotated. Although miRNAs represent a relatively abundant class of transcripts, their expression levels vary greatly among species and tissues. Less abundant miRNAs routinely fail detection using technologies such as cloning, northern hybridization and microarray analysis. Here, we present a real-time quantification method for accurate, sensitive, and economical detection of plant miRNAs based upon the stem-loop RT primer approach using an miRNA-specific primer coupled with a stem-loop specific Universal ProbeLibrary (UPL) probe. This approach represents a highly specific, sensitive, and easy-to-apply system to detect miRNAs. more

• Metagenomics Analysis Using the Genome Sequencer FLX System
  

  The Genome Sequencer FLX System from 454 Life Sciences and Roche Applied Science is a versatile sequencing platform suitable for a wide range of applications, including de novo sequencing and assembly of genomic DNA, transcriptome sequencing, small RNA analysis, and amplicon sequencing. The Genome Sequencer FLX is built upon 454 Sequencing technology that enables long read lengths and very high single-read accuracy. One application in which the technology is accelerating the field's understanding is metagenomics. more

• The New Genome Sequencer FLX System
  

  In 2005, the Genome Sequencer 20 System was introduced into the global life science market. Based on the revolutionary 454 sequencing technology, this system is able to generate hundreds of thousands of sequence reads in a few hours at a fraction of costs compared with the traditional Sanger technology. more

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